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Examples of INDEL/SNP Calling using Novo Aligners and MAQ Tools

Posted by zayed on Thu 21 of Aug., 2008 19:04 MYT

We have simulated some data for checking how much more/less we can find by using the maq .map format on novopaired/novoalign results.

Attached is a document describing some of the work we did with simulated data from the human genome. On real data we have also been finding some interesting things with regards to SNPs and indels.

novopaired.distribution1.04.pdf (325.90 Kb)

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