Does novoalign support unaligned BAM file as input.
We are interested in novoalign. However, we will implement unaligned BAM file to store unaligned reads. Since compared to fastq format, BAM format can store meta information (including read group, platform etc) of the reads and the size of it is smaller than fastq file. So it is important that the aligner can treat with this kind of format. As we know, BWA can using unaligned BAM as input. Do you have any plan to implement this into novoalign?