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Novopaired error, program hangs

I've been working with novopaired for a while and it works very efficiently for what I need, but for some reason about 5% of my files 10,000 reads per file cause the program to display the following error and then must be forced-quit.

I have tried this on multiple servers and the same files always give the same errors

]$ ./novopaired -d human_index -f seqfile_5.fa seqfile_3.fa > novo_output.tab

Interrupted..11
Obtained 6 stack frames.
./novopaired 0x4285bf
/lib64/libc.so.6 0x3c1b6301b0
/lib64/libc.so.6 0x3c1b671dd3
/lib64/libc.so.6(__libc_malloc+0x7d) 0x3c1b672efd
./novopaired 0x43ed49
./novopaired 0x4553f6


Thank you for your help,
David


Hi David,

Could you print head of the report file and send that to me. It'll give me version info and the parameters that you are using.

Also, if possible could you gzip one of the offending read files and send to me at support at novocraft dot com

Thanks, Colin


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