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NovoalignCS and adapter stripping


Is there an option for adapter stripping with NovoalignCS (-a and -5 options with Novoalign)


No not currently. The cutadapt software will do this for you with SOLiD reads. See http://code.google.com/p/cutadapt/.(external link)

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> Is there an option for adapter stripping with NovoalignCS (-a and -5 options with Novoalign)


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