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Re: novoalignMPI with SGE

Posted by colin on Fri 18 of May, 2012 12:44 MYT

Hi,

Could you do a qstat -qc and post the output. I'm thinking sge is not recognising that the processes share memory and then causing the processes to wait on vmem availability.

Could you also try with just two slots, one master & one slave.

Colin

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