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Re: novoalignMPI with SGE

Posted by lebowski on Sat 19 of May, 2012 04:57 MYT

Thanks for the responses. I'm using 2 slots for the job and tried the $fill_up rule as well with no luck. I had been using a small sample of 10k reads but also tried a 200k read and got he same result. I also tried the -l resource setting with no luck either.

Colin, I'm not aware of a qstat -qc option is there another that could show this info?

Reads: 197

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