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Re: support for unaligned BAM

Posted by colin on Thu 19 of Jan., 2012 23:30 MYT

Hi Christof,

Yes, that's a valid assumption. If flag 0x1 is set the read is reverse complemented.

We also use the QUAL field for base qualities and do not check for an OQ:Z: tag so you get recalibrated qualities if you've done calibration.

Colin

Reads: 250

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