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novoClinic

product_novoclinic

An NGS Clinical and Wellness Analysis Platform.

 

“Personalized medicine made easy.”

 

novoClinic is a patient-centric NGS targeted sequence analysis platform that provides integrated sample tracking for quality control and compliance. novoClinic resolves the burden of data mining and interpretation, allowing clinicians to focus on diagnosis and treatment.

 

The advancement of knowledge and the increasing availability of data in gene-disease or trait associations has brought personalized and precision medicine to the forefront. novoClinic is a simple, easy-to-use solution for healthcare providers who intends to engage genomic data as a primary diagnostic and decision-making tool to significantly improve disease treatment and patient’s management.

Why novoClinic?

 

  • Single analysis platform from data QC to report generation.
  • Powered by in-house developed software; novoAlign & novoSort, ensuring continuous support and maintenance.
  • Time-saving and cost effective integrated analysis in a single platform.
  • Features activity tracking, custom disease variant model and internal annotation & knowledge-base among others.
  • Straight-forward data reporting system.
  • Built-in customizable analysis of pipeline.
  • Reproducible data allows accountability and continuity of processes.

Who should use novoClinic?

 

  • Diagnostic laboratories
  • Genetic screening and testing facilities
  • Public and private hospitals / medical institutions

How it works

nc_flow9

User-friendly interface — no coding required

Break the code barrier. Run your analysis faster without having to code.

The all in one clinical and wellness NGS analysis platform

novoClinic has everything that you need to identify any disease-related variants and to screen patients’ wellness and health.

Clinical

NGS Analysis

 

An NGS variant calling and annotation analysis to identify disease-related variants. Pipelines are available for WGS, WES and Amplicon analysis. Supports FASTQ, BAM and VCF.

Wellness

NGS Analysis

 

An NGS variant calling and annotation analysis for genetic and health screening. Pipelines are available for WGS, WES and Amplicon analysis. Supports FASTQ, BAM and VCF.

Clinical 

Targeted Region Analysis

 

A clinical NGS variant calling and annotation analysis for targeted region. Pipelines are available for WES and Amplicon analysis. Requires BAM file.

Wellness 

Targeted Region Analysis

 

A wellness NGS variant calling and annotation analysis for targeted region. Pipelines are available for WES and Amplicon analysis. Requires BAM file.

Other customized analysis pipelines available!

Secure & Customizable Report Generation

Decide how your report looks like as they are 100% customizable. Upload your HTML and CSS report format into novoClinic and generate a downloadable PDF report for your clients to download into their chosen devices.

Customizable report template
Selection tracking
Multi-level verification

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Not familiar with HTML?

 

Take it easy. Contact us and and our team will create one for you.

More features to explore

Compliance to standards
Custom database integration and development
Allows improvement and development of local knowledge-base
Optional integration of data into novoWorx for research purpose
Analysis pipeline development & integration
Custom analytics development

System requirements

Basic requirements

Linux

Linux

64

64-bit operating system

intel

Intel or AMD CPU

desktop

1024 x 768 display

Operating system

 

novoClinic is fully supported on the following operating systems:

 

No. Hardware Minimum requirements
1 Central Processing Unit (CPU)

A single chipset can contain up to 64 physical cores, with 128 threads. On a dual socket server configuration, this will give you up to 256 threads at an all-core maximum clock speed of around 3.4GHz.

AMD EPYC 7000 series

  • 2 Chipset
  • 64 physical cores with 128 threads
  • 3.4GHz
2 Random Access Memory (RAM)

Aligned files that will be passed to the sorting algorithm will be sorted using memory buffers. The file is compressed and will be uncompressed in memory and will need at least 2GB of RAM per GB of Disk space to efficiently perform the sorting in as little time as possible.

256 GB
3 Short Term Storage (Working Storage)

The ephemeral storage will be used to store transient files that are not kept beyond the lifetime of the individual patient analysis runtime. For ephemeral storage, it is recommended that the system utilize SSDs or NVME SSDs for maximum IO throughput. Due to the large sizes of the databases used, installation of the system itself will take up a minimum of 500 GB (depending on the number of databases and the size of the databases used).

2 TB
4 Long Term Storage

For long term storage, the pipeline intermediary files may be removed and the input + final output files be stored at approximately 120GB per patient for WGS analysis, 10GB per patient for WES analysis and 1-5GB for Amplicon analysis, respectively. This will have to be multiplied by the number of patients that will be using the service . Our recommendation is based on data storage for 200 patients.

24 TB (WGS)

2TB (WES)

1-5GB (Amplicon)

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A powerful tool for mapping of short reads onto a reference genome

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A tool to fully support reads from ABI SOLiD Color Space

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novoSplice

A highly precise and sensitive RNA-Seq aligner

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A fast multi-threaded sort/merge tool for BAM files

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A highly effective long reads error correction tool.

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