Aligning Reads from the Polonator
It’s possible however reads from polonator need some pre-processing to get them into a format suitable for Novoalign. We’ll add a description of this and possibly a perl script when we have some spare time.
With current 13bp reads we don’t recommend trying to align against genomes the size of Human, best to stick with smaller organisms or perhaps mRNA.
We are also looking for some test data especially from longer reads, so if you have any that you can share please contact us at support at novocraft dot com.